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The problem was the same seed was getting used for the seam painting pass, causing the fried look. Same issue as if you do img2img on a txt2img with the same seed/prompt. Thanks to @hipsterusername for teaming up to debug this. We got pretty deep into the weeds.
Organization of the source tree: app -- Home of nodes invocations and services assets -- Images and other data files used by InvokeAI backend -- Non-user facing libraries, including the rendering core. configs -- Configuration files used at install and run times frontend -- User-facing scripts, including the CLI and the WebUI version -- Current InvokeAI version string, stored in version/invokeai_version.py